Assume there is a preexisting CSK stressfiber network with a particular node (position
r_N(t)). The node is performing a random motion with a fractional, superdiffusive MSD. A bead (position
r_B(t)) is floating in a viscous medium (friction coefficient
gamma), where it experiences white noise thermal forces (amplitude
vN of velocity fluctuations), causing a diffusive motion. Now a weak spring (constant
k) is connecting the bead to the CSK node. The visco-elastic relaxation time is
tau=gamma/k. How does the MSD of the bead linked elastically to the node look like and how does it depend on
vN and
tau ?
The total force F(t) acting on the bead is given by:
![\vec{F}(t)=k\;\left[\vec{r}_N(t)-\vec{r}_B(t)\right]-\gamma \;\frac{d}{dt}\vec{r}_B(t) + \gamma\;v_N(t)](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_ssM5oTduqe0AYBfbN9vOUyT6QKzO9NN4XxMYdag-PvYHltVcvuXjIH0L8GufX9VNOICb9gRRNkELAjNqPGmwvClUeLNkSU7na0taByQlYWSRInzsExaOV6lk8Zx_xN6UR4lPIoswA9DbJXw-RnrmPSbRnp7QAIGaQYhBibwkVNDvKYkvZyQPamDZgd4QKZeRSsunB2savnkHCgoB9TQFeTnT9zPiSVK_PNVfRURBfkz4SQfB3X2ezIjLmlb4W2kuBJG6f_QUJm5xY3oOw9hRazFGkNLpTavAANjkAHu8uZOImPk8Cu77AWNKGSKB_iGc_nPw=s0-d)
At any moment, the forces from the node, from friction, and from thermal forces are balanced. Setting
F(t)=0 yields a dynamic equation for the bead motion, which was solved numerically (program
boreas_1).
Parameters:NMX=64*1024;dT=0.01;plExp=1.5;difus=5.0;Here the MSD for small thermal noise:

And for larger thermal noise:

Note that depending on the binding strength (
~1/tau), the combination of the diffusive, plateau-like and fractional superdiffusive powerlaws can produce an apparent sub-diffusive regime at intermediate lag-times.
The following figure shows the individual contributions to the total MSD:
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